Files in Gibbsdavidl/ProCoNA
Protein co-expression network analysis (ProCoNA).
DESCRIPTION
NAMESPACE
NEWS
ProCoNA_Package_Blerb.docx
R/allClasses.R
R/bootstrapNetwork.R
R/buildNetwork.R
R/conv.R
R/dataSubset.R
R/errorChecking.R
R/matrixUtils.R
R/moduleMemberStats.R
R/netComparison.R
R/pepPlots.R
R/proconaNet_accessors.R
R/statTests.R
README
TODO
data/ProCoNA_Data.rda
inst/NEWS
inst/doc/ProCoNA_Vignette.Rnw
inst/unitTests/test_peptideCorrelationTest.R
inst/unitTests/test_ppiPermTest.R
inst/unitTests/test_toPermTest.R
man/MMvsPS.Rd
man/MMvsPSallModules.Rd
man/ProCoNA_Data.Rd
man/accessors.Rd
man/bootstrapProconaNetwork.Rd
man/buildProconaNetwork.Rd
man/c2i.Rd
man/compareNetworksWithFishersExactTest.Rd
man/compareNetworksWithFishersExactTestProcona.Rd
man/corBootstrap.Rd
man/correlationWithPhenotypesHeatMap.Rd
man/getFisherMatrix.Rd
man/getPeptideNAs.Rd
man/goStatTest.Rd
man/hclust.Rd
man/i2c.Rd
man/i2col.Rd
man/moduleMemberCorrelations.Rd
man/modulePhenotypeCorrelations.Rd
man/orderMatrixIndex.Rd
man/peptideConnectivityTest.Rd
man/peptideCorrelationTest.Rd
man/plotNet.Rd
man/ppiPermTest.Rd
man/printNet.Rd
man/procona-package.Rd
man/proconaNet-class.Rd
man/proconaVersionFun.Rd
man/runningStats.Rd
man/subsetModCors.Rd
man/subsetPeptideData.Rd
man/toPermTest.Rd
man/utri.Rd
sample_script/procona_pipeline.R
tests/runTests.R
