toPermTest: toPermTest

Description Usage Arguments Value Author(s) Examples

Description

Uses the procona network object, the data with peptides as columns, samples in rows. And the power that the net was built at the number of permutations to do... Modules are permuted and mean topological overlap is recorded, constructing the null. The number of random permutations with mean TO greater than observed provides the p-value.

Usage

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toPermTest(pnet, numPermutes)

Arguments

pnet

ProCoNA network object.

numPermutes

The number of permutations to perform

Value

returns the network obj with the perm test

Author(s)

David L Gibbs

Examples

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data(ProCoNA_Data)
#net1 <- buildProconaNetwork("peptide network", peptideData, pow=12)
toPermTest(net1, 100)

Gibbsdavidl/ProCoNA documentation built on May 8, 2019, 7:51 p.m.