getFisherMatrix: getFisherMatrix

Description Usage Arguments Value Author(s) Examples

Description

Fisher's exact test pairwise on modules.

Usage

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getFisherMatrix(peps1, peps2, colors1, colors2)

Arguments

peps1

Names of entities in the network (nodes of network 1)

peps2

Names of entities in the network (nodes of network 2)

colors1

the module assignments for network 1

colors2

the module assignments for network 2

Value

Returns the fisher test pvalues and count of overlapping peptides.

Author(s)

David L Gibbs

Examples

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data(ProCoNA_Data)
#net1 <- buildProconaNetwork("peptide network", peptideData, pow=12)
#net2 <- buildProconaNetwork("peptide network", peptideData + 0.3*rnorm(length(peptideData)), pow=12)
getFisherMatrix(peptides(net1), peptides(net2), mergedColors(net1), mergedColors(net2))

Gibbsdavidl/ProCoNA documentation built on May 8, 2019, 7:51 p.m.