MMvsPS: Module members vs Peptide Significance

In Gibbsdavidl/ProCoNA: Protein co-expression network analysis (ProCoNA).

Description

Plots the module membership (correlation to eigenvector) against the peptide significance (correlation to phenotype) for a given trait and module

Usage

MMvsPS(pnet, pepdat, phenoVec, mod)

Arguments

pnet	The procona network
pepdat	the peptide data, with rows as samples and columns as peptides
phenoVec	the phenotypic trait, vector
mod	the module of interest

Value

returns a list of module memberships and peptide significances.

Author(s)

David L Gibbs

Examples

data(ProCoNA_Data)
#net1 <- buildProconaNetwork("peptide network", peptideData, pow=13)
MMvsPS(net1, peptideData, phenotypes[,5], 1)

Gibbsdavidl/ProCoNA documentation built on May 8, 2019, 7:51 p.m.