MMvsPS: Module members vs Peptide Significance

Description Usage Arguments Value Author(s) Examples

Description

Plots the module membership (correlation to eigenvector) against the peptide significance (correlation to phenotype) for a given trait and module

Usage

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MMvsPS(pnet, pepdat, phenoVec, mod)

Arguments

pnet

The procona network

pepdat

the peptide data, with rows as samples and columns as peptides

phenoVec

the phenotypic trait, vector

mod

the module of interest

Value

returns a list of module memberships and peptide significances.

Author(s)

David L Gibbs

Examples

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data(ProCoNA_Data)
#net1 <- buildProconaNetwork("peptide network", peptideData, pow=13)
MMvsPS(net1, peptideData, phenotypes[,5], 1)

Gibbsdavidl/ProCoNA documentation built on May 8, 2019, 7:51 p.m.