Files in GreenwoodLab/RVPedigree
Methods for Family-Based Rare-Variant Genetic Association Tests
.Rbuildignore
.travis.yml
DESCRIPTION
NAMESPACE
R/ASKAT.region.R
R/Estim.H0.ASKAT.R
R/Estim.H0.NormalizedASKAT.R
R/Estim.H0.VCC.R
R/Get.G.R
R/GetRelMatrix.R
R/Neg.LogLikelihood.ASKAT.R
R/Neg.LogLikelihood.VC.C1.R
R/Normality.test.R
R/NormalizedASKAT.region.R
R/Preparation.VCC.R
R/Preparation.hap.perm.R
R/RVPedigree-package.R
R/RVPedigree.R
R/VCC1.region.R
R/VCC2.region.R
R/VCC3.region.R
R/compute.weights.R
R/ff.hap.R
R/findParentIndices.R
R/inputChecks.R
R/lettersTo12.R
R/meiose.R
R/perm.hap.R
R/pvalue.ASKAT.R
R/pvalue.NormalizedASKAT.R
R/pvalue.VCC1.R
R/pvalue.VCC2.R
R/pvalue.VCC3.R
R/read.haplo.R
R/read.haplo.bedfile.R
R/read.haplo.pedfile.R
R/read.haplo.shapeit-haps.R
R/read.pedigree.R
R/readMapFile.R
README.md
build/vignette.rds
inst/CITATION
inst/doc/vignette.R
inst/doc/vignette.Rnw
inst/doc/vignette.pdf
inst/extdata/NNormTrait.dat
inst/extdata/OneFamilyExample.ped
inst/extdata/TwoFamilyExample.ped
inst/extdata/covariates.dat
inst/extdata/covariates2.dat
inst/extdata/data.map
inst/extdata/data.ped
inst/extdata/data.phe
inst/extdata/dataB.bed
inst/extdata/dataB.bim
inst/extdata/dataB.fam
inst/extdata/dataT.tfam
inst/extdata/dataT.tped
inst/extdata/data_nullmorgans.map
inst/extdata/genes.lst
inst/extdata/genes2.lst
inst/extdata/gwaa.data.RData
inst/extdata/kinmat.Rdata
inst/extdata/pheno.dat
inst/extdata/test.bed
inst/extdata/test.bim
inst/extdata/test.fam
inst/extdata/test.map
inst/extdata/test.ped
man/ASKAT.region.Rd
man/Estim.H0.ASKAT.Rd
man/Estim.H0.NormalizedASKAT.Rd
man/Estim.H0.VCC.Rd
man/Get.G.Rd
man/GetRelMatrix.Rd
man/Normality.test.Rd
man/NormalizedASKAT.region.Rd
man/Preparation.VCC.Rd
man/Preparation.hap.perm.Rd
man/RVPedigree-package.Rd
man/RVPedigree.Rd
man/VCC1.region.Rd
man/VCC2.region.Rd
man/VCC3.region.Rd
man/compute.weights.Rd
man/perm.hap.Rd
man/pvalue.ASKAT.Rd
man/pvalue.NormalizedASKAT.Rd
man/pvalue.VCC1.Rd
man/pvalue.VCC2.Rd
man/pvalue.VCC3.Rd
man/read.haplo.Rd
man/read.haplo.bedfile.Rd
man/read.haplo.pedfile.Rd
man/read.haplo.shapeit_haps.Rd
man/read.pedigree.Rd
man/readMapFile.Rd
vignettes/vignette.Rnw
