read.pedigree: Read pedigree structure from a Plink file
In GreenwoodLab/RVPedigree: Methods for Family-Based Rare-Variant Genetic Association Tests
Description
Usage
Arguments
Value
Author(s)
View source: R/read.pedigree.R
Description
Extract the pedigree data from a Plink file (in .ped or
.bed format). For example, in the case of a .ped
file this simply extracts the first four columns from the file.
Usage
1
read.pedigree(type, filename)
Arguments
type
character, 'ped', 'bed': format of the
input file (see the filename parameter) containing the
pedigree data (and usually the genomic data as well).
filename
character, path to the input file containing the
pedigree data.
Value
a data frame containing the columns with pedigree data
taken from the input file (i.e. family ID, individual ID, father
ID, mother ID)
Author(s)
Lennart C. Karssen
GreenwoodLab/RVPedigree documentation built on May 6, 2019, 6:33 p.m.
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Description Usage Arguments Value Author(s)
View source: R/read.pedigree.R
Description
Extract the pedigree data from a Plink file (in .ped or
.bed format). For example, in the case of a .ped
file this simply extracts the first four columns from the file.
Usage
1 | read.pedigree(type, filename)
|
Arguments
type |
character, |
filename |
character, path to the input file containing the pedigree data. |
Value
a data frame containing the columns with pedigree data taken from the input file (i.e. family ID, individual ID, father ID, mother ID)
Author(s)
Lennart C. Karssen
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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