phy_write: phy_write
In GuangchuangYu/seqmagick: Sequence Manipulation Utilities
phy_write R Documentation
phy_write
Description
write phylip file
Usage
phy_write(x, outfile, type = "sequential")
Arguments
x
XStringSet object
outfile
output file
type
one of interleaved and sequential
Value
None
Author(s)
Guangchuang Yu
Examples
## Not run:
fa_file <- system.file("extdata/HA.fas", package="seqmagick")
x <- fa_read(fa_file)
aln <- bs_aln(x[1:5])
phy_file <- tempfile(fileext = '.phy')
phy_write(aln, phy_file)
## End(Not run)
GuangchuangYu/seqmagick documentation built on Feb. 9, 2024, 3:06 a.m.
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| phy_write | R Documentation |
phy_write
Description
write phylip file
Usage
phy_write(x, outfile, type = "sequential")
Arguments
x |
XStringSet object |
outfile |
output file |
type |
one of interleaved and sequential |
Value
None
Author(s)
Guangchuang Yu
Examples
## Not run:
fa_file <- system.file("extdata/HA.fas", package="seqmagick")
x <- fa_read(fa_file)
aln <- bs_aln(x[1:5])
phy_file <- tempfile(fileext = '.phy')
phy_write(aln, phy_file)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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