replaceInside: replaceInside
In GuangchuangYu/seqmagick: Sequence Manipulation Utilities
View source: R/replaceInside.R
replaceInside R Documentation
replaceInside
Description
replace character for example from '-' to 'N' of fasta sequence that only applied inside sequence
any '-' character at start/end of the sequence (aligned seqs may contains '-' at prefix/suffix) will not be replaced
Usage
replaceInside(fasfile, from = "-", to = "N", outfile = NULL)
Arguments
fasfile
fasta file
from
character to be replaced, '-' by default
to
replace 'from' to 'to', 'N' by default
outfile
output file
Value
DNAStringSet
Author(s)
Guangchuang Yu
GuangchuangYu/seqmagick documentation built on Feb. 9, 2024, 3:06 a.m.
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View source: R/replaceInside.R
| replaceInside | R Documentation |
replaceInside
Description
replace character for example from '-' to 'N' of fasta sequence that only applied inside sequence any '-' character at start/end of the sequence (aligned seqs may contains '-' at prefix/suffix) will not be replaced
Usage
replaceInside(fasfile, from = "-", to = "N", outfile = NULL)
Arguments
fasfile |
fasta file |
from |
character to be replaced, '-' by default |
to |
replace 'from' to 'to', 'N' by default |
outfile |
output file |
Value
DNAStringSet
Author(s)
Guangchuang Yu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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