epivizNav: Initialize an 'EpivizNavigation' object to visualize in...

In HCBravoLab/epivizrChart: R interface to epiviz web components

Description

Initialize an EpivizNavigation object to visualize in viewer or knit to HTML.

Usage

epivizNav(
  chr = NULL,
  start = NULL,
  end = NULL,
  parent = NULL,
  interactive = FALSE,
  ...
)

Arguments

chr	The chromosome to filter on, e.g., chr="chr11".
start	The start location, e.g., start=99800000.
end	The end location, e.g., end=130383180.
parent	An object of class [EpivizEnvironment] or EpivizNavigation to append the chart within.
interactive	(logical) enable if running a websocket/shiny server
...	Additional arguments for initializing navigation, e.g., gene and geneInRange.

Value

An object of class EpivizNavigation.

Examples

epiviz <- epivizNav(chr="chr11", start=99800000, end=103383180)

HCBravoLab/epivizrChart documentation built on Aug. 10, 2021, 1:05 p.m.