plot-EpivizEnvironment-ANY-method: Generic methods to plot charts and add navigation regions

Description Usage Arguments Examples

Description

Generic methods to plot charts and add navigation regions

Usage

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## S4 method for signature 'EpivizEnvironment,ANY'
plot(x, y, ...)

Arguments

x

an object of type EpivizEnvironment or EpivizNavigation

y

a genomic data object

...

other parameters for the plot method

Examples

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library(epivizrChart)
library(Homo.sapiens)
require(magrittr)

# example data set
data(sumexp)
# create an environment element
epivizEnv <- epivizEnv()

# chain and add navigation regions and plots.
epivizEnv %>% 
plot(sumexp, datasource_name="sumExp", columns=c("cancer", "normal")) %>% 
append_region(chr="chr11", start=118000000, end=121000000) %>% 
plot(sumexp, datasource_name="sumExp", columns=c("normal", "cancer"))
epivizEnv

HCBravoLab/epivizrChart documentation built on Oct. 17, 2018, 2:28 a.m.