Files in HMB3/nenswniche
Rapidly estimate species ranges and intersect with other layers
.gitignore
DESCRIPTION
INVERTS_prepare_data.R
INVERT_SDM_GRAPHS.R
INVERT_SDM_MAPS_KATANA.R
INVERT_SDM_MODELS_KATANA.R
INVERT_SDM_MODELS_SITES_KATANA.R
INVERT_SDM_RESULTS.R
NAMESPACE
PLANTS_prepare_data.R
PLANT_SDM_MODELS_KATANA.R
R/SDM_GEN_MAPPING_FUNCTIONS.R
R/SDM_GEN_MAXENT_FUNCTIONS.R
R/SDM_GEN_PROCESSOR_FUNCTIONS.R
README.md
RMD/INVERTS_FIRE_model_list.Rmd
RMD/INVERTS_FIRE_taxa_list.Rmd
RMD/INVERTS_calculate_habitat.rmd
RMD/INVERT_SDM_KATANA.Rmd
RMD/INVERT_SDM_MAPS.Rmd
RMD/REPTILES_prepare_data.Rmd
data/ALA.rda
data/ALA_keep.rda
data/AUS.rda
data/IBRA.rda
data/Koppen_shp.rda
data/Koppen_zones.rda
data/LAND.rda
data/PBI_AUS.rda
data/PBI_AUS_SITES.rda
data/PBI_site_data.rda
data/SUA.rda
data/Taxonomy/PBI_updated_dump_sorted.tsv
data/all.insect.families.rda
data/all.insect.genera.rda
data/all.insect.plant.spp.rda
data/all.insect.spp.rda
data/all_insect_site_df_families.rda
data/all_insect_site_df_genera.rda
data/all_insect_site_df_species.rda
data/aus.bats.rda
data/bat.spp.rda
data/bioclim_variables.rda
data/bs_predictors.rda
data/env_cols.rda
data/gbif_keep.rda
data/gcms.30.rda
data/gcms.50.rda
data/gcms.70.rda
data/gcms.rda
data/insect.genus.rda
data/insect.spp.rda
data/insect_data_families.rda
data/plant.spp.rda
data/results_columns.rda
data/scen_2030.rda
data/scen_2050.rda
data/scen_2070.rda
data/sdm_table_vars.rda
data/sdmgen_packages.rda
data/target.host.plants.df.rda
data/target.host.plants.rda
data/target.insect.families.rda
data/target.insect.genera.rda
data/target.insect.spp.df.rda
data/target.insect.spp.rda
data/target_insects_host_plants.rda
data/template_1km_WGS84.tif
man/calc_enviro_niches.Rd
man/calculate_habitat_categories_intersect.Rd
man/calculate_taxa_habitat_fire_features.Rd
man/calculate_taxa_habitat_host_features.Rd
man/calculate_taxa_habitat_host_rasters.Rd
man/check_spatial_outliers.Rd
man/combine_ala_records.Rd
man/combine_gbif_records.Rd
man/combine_records_extract.Rd
man/compile_sdm_results.Rd
man/completeFun.Rd
man/coord_clean_records.Rd
man/diverge0.Rd
man/download_ALA_all_families.Rd
man/download_ALA_all_genera.Rd
man/download_ALA_all_species.Rd
man/download_ALA_all_tribes.Rd
man/download_GBIF_all_species.Rd
man/fit_maxent_targ_bg_back_sel_crop.Rd
man/fit_maxent_targ_bg_back_sel_no_crop.Rd
man/fit_maxent_targ_bg_full_no_crop.Rd
man/format_ala_dump.Rd
man/gdal_resample.Rd
man/habitat_threshold.Rd
man/local_simplify.Rd
man/niche_estimate.Rd
man/plot_range_histograms.Rd
man/prepare_sdm_table.Rd
man/project_maxent_current_grids_mess.Rd
man/repair_geometry.Rd
man/run_sdm_analysis_crop.Rd
man/run_sdm_analysis_no_crop.Rd
man/shapefile_vector_from_raster.Rd
man/split_shp.Rd
man/taxa_records_habitat_features_intersect.Rd
man/var_importance.Rd
output/Figures/A_primonactus_Fire.png
output/Figures/Amphistomus_primonactus_SDM_VEG_intersect_Fire_Barplots.png
output/Figures/Amphistomus_primonactus_sdm_fire_classes_barplots.png
output/Figures/Diorygopyx_asciculifer_SDM_VEG_intersect_Fire.png
output/Figures/Diorygopyx_asciculifer_SDM_VEG_intersect_Fire_Categories.png
output/Figures/Diorygopyx_asciculifer_bs_predictor_correlation.png
output/Figures/Diorygopyx_asciculifer_mess_panel.png
output/Figures/Diorygopyx_asciculifer_sdm_fire_classes_barplots.png
output/Figures/Diorygopyx_asciculifer_sdm_veg_intersect_fire_barplots.png
output/Figures/Fig_1_niches.png
output/Figures/Fig_2_SDM_thresh.png
output/Figures/Fig_Veg_Fire.png
output/Figures/Molycria_mammosa_mess_panel.png
output/Figures/Mutusca_brevicornis_bs_predictor_correlation.png
output/Figures/Mutusca_brevicornis_buffer_occ.png
output/Figures/N_vinitor_Fire.png
output/Figures/Nysius_vinitor_sdm_fire_classes_barplots.png
output/Figures/Nysius_vinitor_sdm_veg_intersect_fire_barplots.png
output/Figures/all_habitat_fesm_class_type_barplot.png
output/Figures/all_habitat_veg_type_barplot.png
output/Figures/all_sdm_fire_class_plot.png
output/Figures/all_sdm_fire_veg_plot.png
output/Figures/fesm_inv_species_scatter_plots.png
output/Figures/sdm_invert_combined_barplots.png
output/invert_maxent_raster_update/Habitat_suitability/INVERTS_FIRE_SPATIAL_DATA_LUT_JUNE_2022.xlsm
readme.rmd
