API for HajkD/metablastr
Perform Massive Local BLAST Searches
| Global functions | |
|---|---|
| blast2bed | Man page Source code |
| blast_best_hit | Man page Source code |
| blast_best_reciprocal_hit | Man page Source code |
| blast_genomes | Man page Source code |
| blast_nucleotide_to_genomes | Man page Source code |
| blast_nucleotide_to_nucleotide | Man page Source code |
| blast_nucleotide_to_protein | Man page Source code |
| blast_outfmt_colnames | Source code |
| blast_outfmt_colnames_databases | Source code |
| blast_protein_to_nr_database | Man page Source code |
| blast_protein_to_nucleotide | Man page Source code |
| blast_protein_to_protein | Man page Source code |
| blast_protein_to_proteomes | Man page Source code |
| blast_repbase | Man page Source code |
| blast_rpsblast | Man page Source code |
| detect_homologs_cds_to_cds | Man page Source code |
| detect_homologs_proteome_to_proteome | Man page Source code |
| extract_hit_seqs_from_genomes | Man page Source code |
| extract_promotor_seqs_from_genome | Man page Source code |
| extract_random_seqs_from_genome | Man page Source code |
| extract_random_seqs_from_multiple_genomes | Man page Source code |
| extract_upstream_promotor_seqs | Man page Source code |
| file_contains_aa | Man page Source code |
| file_contains_dna | Man page Source code |
| filter_best_hits | Man page Source code |
| filter_homologs_core_set | Man page Source code |
| filter_homologs_core_set_n_species | Man page Source code |
| gg_blast_hits | Man page Source code |
| gg_blast_hits_summary | Man page Source code |
| gg_hits_boxplot | Man page Source code |
| gg_homologs_one_to_one | Man page Source code |
| gg_pairwise_orthologs_line | Man page Source code |
| gg_shared_genes | Source code |
| gg_shared_splice_variants | Source code |
| gg_species_dnds_blast_tbl | Man page Source code |
| gg_species_feature_blast_tbl | Man page Source code |
| gg_species_promotor_dist_blast_tbl | Man page Source code |
| is_blast_installed | Source code |
| is_outformat | Source code |
| is_samtools_installed | Source code |
| list_outformats | Man page Source code |
| motif_compare | Man page Source code |
| motif_compare_multi | Man page |
| motif_compare_multi_promotor_seqs | Man page Source code |
| motif_count | Man page Source code |
| motif_count_matrix | Man page Source code |
| motif_enrichment | Man page Source code |
| motif_enrichment_multi | Man page Source code |
| motif_enrichment_multi_promotor_seqs | Man page Source code |
| outformat2num | Source code |
| read_blast | Man page Source code |
| read_blast_databases | Man page Source code |
| remove_multipart_transcripts | Source code |
| sample_chromosome_intervals | Man page Source code |
| ws_wrap | Source code |
