blast2bed: Export BLAST output table to BED file

In HajkD/metablastr: Perform Massive Local BLAST Searches

Export BLAST output table to BED file

Description

Taking a blast_tbl as input this function exports the following columns as BED file.

• chromosome is defined by the blast_tbl column subject_id.

• start is defined by the blast_tbl column s_start.

• end is defined by the blast_tbl column s_end.

Usage

blast2bed(blast_tbl, output)

Arguments

blast_tbl	a BLAST table generated with any blast_*() function.
output	file path or name of the output file.

Author(s)

Hajk-Georg Drost

HajkD/metablastr documentation built on Sept. 14, 2023, 5:26 p.m.