View source: R/motif_count_matrix.R
motif_count_matrix | R Documentation |
Detect all matches of a given motif (typically a short string) in a (typically long sequence) reference sequence or set of reference sequences. For each sequence and each motif a count matrix is generated and returned.
motif_count_matrix(file, motifs, max.mismatch = 0, min.mismatch = 0, ...)
file |
a file path to the |
motifs |
a character string specifying the sequence motifs that shall be screened and counted. |
max.mismatch |
the maximum number of mismatching letters allowed (see |
min.mismatch |
the minimum number of mismatching letters allowed (see |
... |
additional arguments passed to |
Hajk-Georg Drost
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