View source: R/extract_hit_seqs_from_genomes.R
extract_hit_seqs_from_genomes | R Documentation |
fasta
file(s)In some cases, users may wish to extract the sequences of the respective blast hit
stored in a blast_tbl
. This function enables to quickly extract such sequences and store
them in one general or multiple genome specific fasta
file(s).
extract_hit_seqs_from_genomes(
blast_tbl,
subject_genomes,
file_name = NULL,
separated_by_genome = FALSE,
update = TRUE,
path = NULL
)
blast_tbl |
a BLAST table generated with |
subject_genomes |
a vector containing file paths to the reference genomes that shall be queried (e.g. file paths returned by |
file_name |
name of the fasta file that stores the BLAST hit sequences. This name will only be used when |
separated_by_genome |
a logical value indicating whether or not hit sequences from different genomes should be stored in the same
output |
update |
shall an existing |
path |
a folder path in which corresponding |
Hajk-Georg Drost
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