PlinkBedCalls: return variant calls per sample that match user-defined...
In Halvee/rvatk: Rare Variant Analysis Toolkit
Description
return variant calls per sample that match user-defined genotype.
Usage
1
PlinkBedCalls(pb, samples, vars, gt = 1, as.df = F)
Arguments
pb
plinkbed, a snpMatrix object courtesy of the snpStats pkg
samples
a vector of samples to subset on.
vars
a vector of variants to subset on.
gt
genotype count to subset on.
as.df
return calls in data.frame format?
Halvee/rvatk documentation built on May 6, 2019, 10:55 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
return variant calls per sample that match user-defined genotype.
Usage
1 | PlinkBedCalls(pb, samples, vars, gt = 1, as.df = F)
|
Arguments
pb |
plinkbed, a snpMatrix object courtesy of the snpStats pkg |
samples |
a vector of samples to subset on. |
vars |
a vector of variants to subset on. |
gt |
genotype count to subset on. |
as.df |
return calls in data.frame format? |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.