Files in Halvee/rvatk
Rare Variant Analysis Toolkit
DESCRIPTION
NAMESPACE
R/collapsingmatrix.R
R/plinkbed.R
R/qualvar.R
R/shared_functions.R
inst/script/casectrl_burdentest.R
inst/script/casectrl_global_variant_burden.R
inst/script/create_collapsing_matrix.R
inst/script/eqn.txt
inst/script/eqn_lm.txt
inst/script/fam_trans_ntrans.R
inst/script/listvaranno_to_ctrlinf.R
inst/script/listvaranno_to_varinfo.R
inst/script/listvargeno_transform.R
inst/script/plinkbed_to_TADAinput.R
inst/script/plinkbed_transform.R
inst/script/test.txt
man/AddLooMafCol.Rd
man/ApplyThreshold.Rd
man/BurdenTest.Rd
man/CollapsingMatrixInit.Rd
man/CollapsingMatrixRead.Rd
man/CollapsingMatrixRecode.Rd
man/CollapsingMatrixShrink.Rd
man/CollapsingMatrixWrite.Rd
man/GetAlleleCounts.Rd
man/PlinkBedAlleleSum.Rd
man/PlinkBedCalls.Rd
man/PlinkBedGtsTransform.Rd
man/PlinkBedInit.Rd
man/PlinkBedSubset.Rd
man/PlinkBedToQualvar.Rd
man/ProcessString.Rd
man/QualvarRead.Rd
man/QualvarSubset.Rd
man/QualvarToCollapsingMatrix.Rd
man/ReadConditionFile.Rd
man/ReadGenesetsFile.Rd
man/ReadLargeTable.Rd
man/ReadListFile.Rd
man/SamplepedIidFidList.Rd
man/StringToSet.Rd
man/TblCndSubset.Rd
man/UpdateTable.Rd
man/WriteLargeTable.Rd
rvatk.Rproj
tests/testthat.R
tests/testthat/casectrl.clpsmat
tests/testthat/casectrl.clpsmat.gz
tests/testthat/casectrl.sampleped
tests/testthat/fam.sampleped
tests/testthat/famctrl.bed
tests/testthat/famctrl.bim
tests/testthat/famctrl.fam
tests/testthat/famctrl.log
tests/testthat/famctrl.map
tests/testthat/famctrl.ped
tests/testthat/famctrl.qualvar
tests/testthat/famctrl.sampleped
tests/testthat/funcs.varinfo
tests/testthat/genes.geneset
tests/testthat/genes.genesets
tests/testthat/sib.sampleped
tests/testthat/test.condition
tests/testthat/test_CollapsingMatrix.R
tests/testthat/test_PlinkBed.R
tests/testthat/test_Qualvar.R
tests/testthat/test_misc.R
tests/testthat/test_plinkbed_transform.R
tests/testthat/trio.sampleped
