BurdenTest: perform a case/control burden test on aggregated rare variant...
In Halvee/rvatk: Rare Variant Analysis Toolkit
View source: R/shared_functions.R
Description
perform a case/control burden test on aggregated rare variant sequence data.
Usage
1
BurdenTest(mat, genes, cases, ctrls, collapse.thresh = 0, ...)
Arguments
mat
collapsing matrix data structure.
genes
list of genes to include in burden test.
cases
vector of case names.
ctrls
vector of ctrl names.
collapse.thresh
integer threshold for inclusion of sample genotype,
if >0 then collapsing analyses are used, else
poisson tests used (case vs. ctrl variant rate).
...
additional args for fisher.test or poisson.test
Halvee/rvatk documentation built on May 6, 2019, 10:55 p.m.
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View source: R/shared_functions.R
Description
perform a case/control burden test on aggregated rare variant sequence data.
Usage
1 | BurdenTest(mat, genes, cases, ctrls, collapse.thresh = 0, ...)
|
Arguments
mat |
collapsing matrix data structure. |
genes |
list of genes to include in burden test. |
cases |
vector of case names. |
ctrls |
vector of ctrl names. |
collapse.thresh |
integer threshold for inclusion of sample genotype, if >0 then collapsing analyses are used, else poisson tests used (case vs. ctrl variant rate). |
... |
additional args for fisher.test or poisson.test |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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