View source: R/commandlineFunctions.R
runCreateSubsets runs without arguments. Upon call, it reads command-line parameters pointing to the [highdim] file for which sample subsets should be created. [nrCV] subsets of the [highdim] data of size [sizeCV] are generated by random sampling of the row indeces (sampling seed can be specified via [seed]). The subsets will be saved in the same directory as the [highdim]_cv1.csv, ..., [highdim]_cv[nrCV].csv. For help on the command line arguments that can be passed, see examples below. From the command line, the help function can be called via Rscript -e "Stability::runCreateSubsets()" –args –help
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1 2 3 4 5 6 7 8 9 | # (not run)
# Rscript -e "Stability::runDimensionalityReduction()" \
#--args \
#--highdim=/path/to/highdimfile \
#--cov=/path/to/optional/covariatefile \
#--seed=234 \
#--nrCV=10 \
#--sizeCV=0.8 \
#--showProgress \
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