Files in HealthInformaticsUT/Cohort2Trajectory
Package for creating patient orientated treatment trajectories from cohorts defined in OHDSI ATLAS
.gitignore
Cohort2Trajectory.Rproj
DESCRIPTION
LICENSE
NAMESPACE
R/Cohort2Trajectory-package.R
R/RcppExports.R
R/config.R
R/global_vars.R
R/helpers.R
R/importData.R
R/importDataForStudy.R
R/trajectoryGeneration.R
README.md
_pkgdown.yml
man/addListVectorEl.Rd
man/addPersonalData.Rd
man/cleanCohortData.Rd
man/cohort2TrajectoryConfiguration.Rd
man/createMandatorySubDirs.Rd
man/createStateList.Rd
man/createTrajectories.Rd
man/daysOverlap.Rd
man/dot-toJSON.Rd
man/generateCohortSetCSV.Rd
man/getCohortData.Rd
man/getCohorts.Rd
man/getDataForStudy.Rd
man/getInclusionTable.Rd
man/getTrajectoriesContinuous.Rd
man/getTrajectoriesDiscrete.Rd
man/idExists.Rd
man/is.nan.data.frame.Rd
man/is_overlap.Rd
man/loadRenderTranslateSql.Rd
man/loadSettings.Rd
man/merge_overlaps.Rd
man/ordered_combinations.Rd
man/removeListVectorEl.Rd
man/sanitize_filenames.Rd
man/sanitize_single.Rd
man/save_object.Rd
man/updateMergedStates.Rd
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.json
src/.gitignore
src/RcppExports.cpp
src/combineCohorts.cpp
src/discreteTransistions.cpp
src/removeAfterAbsorbingStatesContinuous.cpp
src/removeAfterAbsorbingStatesDiscrete.cpp
src/removeProhibitedTransitionsContinuous.cpp
tests/.DS_Store
tests/testthat.R
tests/testthat/Eunomia/GiBleed_5.3.zip
tests/testthat/Eunomia/GiBleed_5.3_0.1.duckdb
tests/testthat/test-Connection.R
tests/testthat/test-MainWorkflow.R
tests/testthat/test-generateTrajectories.R
tests/testthat/test-getCohortData.R
tests/testthat/test-getCohorts.R
tests/testthat/test-importDataForStudy.R
tests/testthat/testStudy/.DS_Store
tests/testthat/testStudy/Data/importedData.csv
tests/testthat/testStudy/Data/importedDataCleaned_.csv
tests/testthat/testStudy/Data/importedDataCleaned_0.csv
tests/testthat/testStudy/Data/patientDataContinuous.csv
tests/testthat/testStudy/Data/patientDataDiscrete.csv
tests/testthat/testStudy/JSON/0.json
tests/testthat/testStudy/JSON/1.json
tests/testthat/testStudy/JSON/3.json
tests/testthat/testStudy/JSON/4.json
tests/testthat/testStudy/JSON/CohortsToCreate.csv
tests/testthat/testStudy/JSON/Test_State1.json
tests/testthat/testStudy/JSON/Test_State2.json
tests/testthat/testStudy/Settings/trajectorySettings.csv
tests/testthat/testStudyMain/.DS_Store
tests/testthat/testStudyMain/Data/importedDataCleaned_0.csv
tests/testthat/testStudyMain/Data/importedDataCleaned_named_1.csv
tests/testthat/testStudyMain/Data/importedDataCleaned_test1.csv
tests/testthat/testStudyMain/Data/patientDataDiscrete.csv
tests/testthat/testStudyMain/JSON/0.json
tests/testthat/testStudyMain/JSON/CohortsToCreate.csv
tests/testthat/testStudyMain/JSON/TestState1.json
tests/testthat/testStudyMain/JSON/TestState2.json
tests/testthat/testStudyMain/JSON/test1.json
tests/testthat/testStudyMain/JSON/test3.json
tests/testthat/testStudyMain/JSON/test4.json
tests/testthat/testStudyMain/Settings/trajectorySettings.csv
vignettes/.gitignore
vignettes/a00_introduction.Rmd
vignettes/a01_configuration.Rmd
vignettes/a02_import.Rmd
vignettes/a03_trajectories.Rmd
vignettes/a04_example.Rmd
