getTrajectoriesDiscrete: Convert the imported cohort data to patient treatmnet...

In HealthInformaticsUT/Cohort2Trajectory: Package for creating patient orientated treatment trajectories from cohorts defined in OHDSI ATLAS

Convert the imported cohort data to patient treatmnet trajectories

Description

This function outputs a data.frame object which describes the movement of patients between the defined states

Usage

getTrajectoriesDiscrete(
  cdm,
  cohortData,
  stateDuration = 30,
  stateSelection = 1,
  statePriorityVector = NULL,
  absorbingStates = NULL,
  oocFix = "None",
  studyName = "",
  addPersonalData = TRUE,
  allowedStatesList = list()
)

Arguments

cdm	a cdm object
cohortData	A data.frame object which is queried with getCohortsPatients function
stateDuration	The length of a discrete state
stateSelection	The chosen state selection method
statePriorityVector	The order of priority for states
absorbingStates	The absorbing states: patient trajectory ends with it
oocFix	The method to use for replacing "OUT OF COHORT" states with more relevant states
studyName	name chosen for study, is used as a folder name
addPersonalData	Logical, indicating whether or not to add personal data for each patient
allowedStatesList	A list object which indicates accessible states from said state

HealthInformaticsUT/Cohort2Trajectory documentation built on March 1, 2025, 7:47 p.m.