cleanCohortData: This function eliminates patients which do not fulfill the...

In HealthInformaticsUT/Cohort2Trajectory: Package for creating patient orientated treatment trajectories from cohorts defined in OHDSI ATLAS

This function eliminates patients which do not fulfill the inclusion criteria

Description

This function eliminates patients which do not fulfill the inclusion criteria

Usage

cleanCohortData(
  cohortData,
  mandatoryStates,
  outOfCohortAllowed = FALSE,
  mergeStates = FALSE,
  mergeThreshold = 0.5
)

Arguments

cohortData	Imported cohort data
mandatoryStates	States which have to be present in the trajectory, otherwise dropped#'
outOfCohortAllowed	boolean whether the patient trajectory can surpass the target cohort's observation-period
mergeStates	Boolean, if you want to merge states when they overlap
mergeThreshold	Value from 0 to 1. If mergeStates is TRUE the states will be label-merged given they overlap more than the specified threshold. Can be given as vector, then multiple iterations are runned,

Value

A dataframe with selected patients. Columns: cohort_definition_id, subject_id, cohort_start_date, cohort_end_date

HealthInformaticsUT/Cohort2Trajectory documentation built on March 1, 2025, 7:47 p.m.