getTrajectoriesContinuous: Prepare patientData dataframe for msm package

In HealthInformaticsUT/Cohort2Trajectory: Package for creating patient orientated treatment trajectories from cohorts defined in OHDSI ATLAS

Prepare patientData dataframe for msm package

Description

This function prepares patientData dataframe for msm package

Usage

getTrajectoriesContinuous(
  cdm,
  patientData,
  stateSelection,
  statePriorityVector,
  absorbingStates = NULL,
  studyName = "",
  addPersonalData = TRUE,
  allowedStatesList = list()
)

Arguments

cdm	a cdm object
patientData	Object of class data.frame with columns subject_id, state_label, STATE_START_DATE, STATE_END_DATE
stateSelection	Selection of the type of ordering
statePriorityVector	All states in prioritized order
absorbingStates	Absorbing states in dataframe
studyName	name chosen for study, is used as a folder name
addPersonalData	Logical, indicating whether or not to add personal data for each patient
allowedStatesList	A list object which indicates accessible states from said state

Value

A dataframe ready for using msm package

HealthInformaticsUT/Cohort2Trajectory documentation built on March 1, 2025, 7:47 p.m.