Man pages for Heath1210/intSiteR
Process fastq files to get precise integration site coordinates
| alignBowtie2 | Using bowtie2 to align reads |
| bam2bed | Transform bam to bed |
| barcTrans | Translate barcode sequences to number |
| closeSeqIdx | Find duplicates based on edit distance |
| intBed | Fetch integration sites from bed files |
| intSite | Fetch the integration sites from raw fastq files |
| intTrim | Reads filtration and trimming |
| mergeReads | Merge paired-end Reads to single reads |
| readBed | Read bed file |
| sam2bam | Transform sam to bam |
