alignBowtie2: Using bowtie2 to align reads
In Heath1210/intSiteR: Process fastq files to get precise integration site coordinates
Description
Using bowtie2 to align reads
Usage
1
alignBowtie2(fa1, fa2 = NULL, outdir, bowtie2 = "bowtie2", ref, threads = 8)
Arguments
fa1
a fasta file
fa2
a fasta file
outdir
the folder of output
bowtie2
bowtie2 path
ref
reference genome
threads
number of threads used in alignment
Heath1210/intSiteR documentation built on Dec. 17, 2021, 10:32 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Using bowtie2 to align reads
Usage
1 | alignBowtie2(fa1, fa2 = NULL, outdir, bowtie2 = "bowtie2", ref, threads = 8)
|
Arguments
fa1 |
a fasta file |
fa2 |
a fasta file |
outdir |
the folder of output |
bowtie2 |
bowtie2 path |
ref |
reference genome |
threads |
number of threads used in alignment |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.