mergeReads: Merge paired-end Reads to single reads

In Heath1210/intSiteR: Process fastq files to get precise integration site coordinates

Description

Using fastp to merge paired-end Reads

Usage

mergeReads(
  fq1,
  fq2,
  fastp = "fastp",
  fq1_out = NULL,
  fq2_out = NULL,
  mg_out = NULL,
  threads = 8
)

Arguments

fq1	a fastq file
fq2	a fastq file
fastp	fastp path
fq1_out	filtered fq1 output file
fq2_out	filtered fq2 output file
mg_out	merged reads output file
threads	number of threads used in alignment

Heath1210/intSiteR documentation built on Dec. 17, 2021, 10:32 p.m.