Files in HectorRDB/Dune
Improving replicability in single-cell RNA-Seq cell type discovery
.Rbuildignore
.github/workflows/RCmdCheck.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS
R/AllGenerics.R
R/Dune.R
R/core.R
R/data.R
R/plot.R
R/utils.R
R/zzz.R
README.md
_pkgdown.yml
codecov.yml
data/clusMat.rda
data/nuclei.rda
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/articles/Dune.html
docs/articles/Dune_files/figure-html/unnamed-chunk-1-1.png
docs/articles/Dune_files/figure-html/unnamed-chunk-10-1.png
docs/articles/Dune_files/figure-html/unnamed-chunk-2-1.png
docs/articles/Dune_files/figure-html/unnamed-chunk-2-2.png
docs/articles/Dune_files/figure-html/unnamed-chunk-2-3.png
docs/articles/Dune_files/figure-html/unnamed-chunk-3-1.png
docs/articles/Dune_files/figure-html/unnamed-chunk-3-2.png
docs/articles/Dune_files/figure-html/unnamed-chunk-3-3.png
docs/articles/Dune_files/figure-html/unnamed-chunk-4-1.png
docs/articles/Dune_files/figure-html/unnamed-chunk-6-1.png
docs/articles/Dune_files/figure-html/unnamed-chunk-7-1.png
docs/articles/Dune_files/figure-html/unnamed-chunk-8-1.png
docs/articles/Dune_files/figure-html/unnamed-chunk-9-1.png
docs/articles/index.html
docs/articles/logo.png
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/ARIEvolution.html
docs/reference/ARIImp-1.png
docs/reference/ARIImp.html
docs/reference/ARIs.html
docs/reference/ARItrend-1.png
docs/reference/ARItrend.html
docs/reference/ConfusionEvolution.html
docs/reference/ConfusionPlot-1.png
docs/reference/ConfusionPlot.html
docs/reference/Dune.html
docs/reference/clusMat.html
docs/reference/clusterConversion.html
docs/reference/dot-adjustedRandIndex.html
docs/reference/functionTracking.html
docs/reference/index.html
docs/reference/intermediateMat.html
docs/reference/nuclei.html
docs/reference/plotARIs-1.png
docs/reference/plotARIs-2.png
docs/reference/plotARIs.html
docs/reference/plotPrePost-1.png
docs/reference/plotPrePost.html
docs/reference/whenToStop.html
inst/CITATION
man/ARIImp.Rd
man/ARIs.Rd
man/ARItrend.Rd
man/ConfusionEvolution.Rd
man/ConfusionPlot.Rd
man/Dune.Rd
man/NMIImp.Rd
man/NMIs.Rd
man/NMItrend.Rd
man/clusMat.Rd
man/clusterConversion.Rd
man/dot-adjustedRandIndex.Rd
man/functionTracking.Rd
man/intermediateMat.Rd
man/nuclei.Rd
man/plotARIs.Rd
man/plotNMIs.Rd
man/plotPrePost.Rd
man/whenToStop.Rd
tests/testthat.R
tests/testthat/test-Dune-inputs.R
tests/testthat/test-Main-Dune.R
tests/testthat/test-auxilliary-functions.R
tests/testthat/test-plots.R
vignettes/.gitignore
vignettes/Dune.Rmd
vignettes/logo.png
