create_differential_topology: Create Example function

In HectorRDB/condiments: Differential Topology, Progression and Differentiation

Create Example function

Description

This creates a simulated reduced dimension dataset

Usage

create_differential_topology(
  n_cells = 200,
  noise = 0.15,
  shift = 10,
  unbalance_level = 0.9,
  speed = 1
)

Arguments

n_cells	The number of cells in the dataset.
noise	Amount of noise. Between 0 and 1.
shift	How much should the top lineage shift in condition B.
unbalance_level	How much should the bottom lineage be unbalanced toward condition A.
speed	How fast the cells from condition B should differentiate

Value

A list with two components

• sd: An n_cells by 4 dataframe that contains the reduced dimensions coordinates, lineage assignment (1 or 2) and condition assignment (A or B) for each cell.

• mst: a data.frame that contains the skeleton of the trajectories

Examples

sd <- create_differential_topology()

HectorRDB/condiments documentation built on Feb. 5, 2024, 10:24 p.m.