toy_dataset: A toy dataset used in the vignette and in the examples
In HectorRDB/condiments: Differential Topology, Progression and Differentiation
toy_dataset R Documentation
A toy dataset used in the vignette and in the examples
Description
This example has been created using the 'create_differential_topology'
function.
Usage
data(toy_dataset)
Format
A list with two dataframes
*sd* A dataframe containing, for 1000 cells, the dimensions in two
coordinates, and cluster, lineage and condition assignment.
-
mst: a data.frame that contains the skeleton of the trajectories
Source
The following code reproduces the object
set.seed(21)
library(condiments)
data <- create_differential_topology(n_cells = 1000, shift = 0)
data$sd$Dim2 <- data$sd$Dim2 * 5
data$mst$Dim2 <- data$mst$Dim2 * 5
data$sd$cl <- kmeans(as.matrix(data$sd[, 1:2]), 8)$cluster
data$sd$cl <- as.character(data$sd$cl)
HectorRDB/condiments documentation built on Feb. 5, 2024, 10:24 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| toy_dataset | R Documentation |
A toy dataset used in the vignette and in the examples
Description
This example has been created using the 'create_differential_topology' function.
Usage
data(toy_dataset)
Format
A list with two dataframes
*sd* A dataframe containing, for 1000 cells, the dimensions in two coordinates, and cluster, lineage and condition assignment.
-
mst: a data.frame that contains the skeleton of the trajectories
Source
The following code reproduces the object
set.seed(21)
library(condiments)
data <- create_differential_topology(n_cells = 1000, shift = 0)
data$sd$Dim2 <- data$sd$Dim2 * 5
data$mst$Dim2 <- data$mst$Dim2 * 5
data$sd$cl <- kmeans(as.matrix(data$sd[, 1:2]), 8)$cluster
data$sd$cl <- as.character(data$sd$cl)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.