differentiationTest: Differential differentiation

In HectorRDB/condiments: Differential Topology, Progression and Differentiation.

Differential differentiation

Description

Test whether or not the cell repartition between lineages is independent of the conditions

Usage

differentiationTest(...)

Arguments

...	See the fateSelectionTest

Value

See the fateSelectionTest

Examples

data('slingshotExample', package = "slingshot")
rd <- slingshotExample$rd
cl <- slingshotExample$cl
condition <- factor(rep(c('A','B'), length.out = nrow(rd)))
condition[110:139] <- 'A'
sds <- slingshot::slingshot(rd, cl)
differentiationTest(sds, condition)

HectorRDB/condiments documentation built on Dec. 8, 2024, 6:20 a.m.