searchTotalseq: Annotate antibodies with gene IDs using totalseq data

In HelenLindsay/AbNames: Standardize Antibody Names

Annotate antibodies with gene IDs using totalseq data

Description

Search for exact matches between antigen names, clones, or catalogue numbers in data.frame x and totalseq cocktails data set. Relies on column names in matching column names in totalseq (Antigen, Cat_Number and/or Clone). In our experience, the antibody clone almost always uniquely identifies an antibody, but there is at least one exception so we recommend caution and manual checking if matching by only Clone.

Usage

searchTotalseq(x, cols = NULL)

Arguments

x	data.frame, containing at minimum columns named "Antigen"
cols	list of columns to match in totalseq data. If not specified, defaults to catalogue number, antigen and clone.

Details

This function works by repeated left_joins and can add rows. Only rows that do not already have identifiers are joined with the totalseq data. This function does not check if existing identifiers match totalseq identifiers. If antigens are matched by Cat_Number or Clone and Antigen is NA, Antigen will be filled.

Author(s)

Helen Lindsay

HelenLindsay/AbNames documentation built on June 6, 2023, 1:18 p.m.