sharedSubstr: Group based on shared substrings
In HelenLindsay/AbNames: Standardize Antibody Names
sharedSubstr R Documentation
Group based on shared substrings
Description
Takes a vector of words and a corresponding vector of group ids
and returns a numeric vector indicating groupings where members of a
group share a word with at least one other member of the group.
Usage
sharedSubstr(df, x = "value", id = "ID", new_col = "AB_group")
Arguments
df
A query data.frame, e.g. created by makeQueryTable
x
Name of column to check for shared substrings
(character(1), default: "value")
id
Name of ID column uniquely identifying rows
(character(1), default: "ID")
new_col
Name of column to be added to df
(character(1), default: "AB_group")
Details
The intention is that if an antibody has alternative names and is sometimes
called by both, e.g. CD274 (B7-H1), we would like to group all entries
matching CD274 with all entries matching B7-H1.
Although this function can be useful for matching antibody names, in our
experience manual checking of the results is required.
HelenLindsay/AbNames documentation built on June 6, 2023, 1:18 p.m.
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| sharedSubstr | R Documentation |
Group based on shared substrings
Description
Takes a vector of words and a corresponding vector of group ids and returns a numeric vector indicating groupings where members of a group share a word with at least one other member of the group.
Usage
sharedSubstr(df, x = "value", id = "ID", new_col = "AB_group")
Arguments
df |
A query data.frame, e.g. created by makeQueryTable |
x |
Name of column to check for shared substrings (character(1), default: "value") |
id |
Name of ID column uniquely identifying rows (character(1), default: "ID") |
new_col |
Name of column to be added to df (character(1), default: "AB_group") |
Details
The intention is that if an antibody has alternative names and is sometimes called by both, e.g. CD274 (B7-H1), we would like to group all entries matching CD274 with all entries matching B7-H1.
Although this function can be useful for matching antibody names, in our experience manual checking of the results is required.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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