Files in HelenaLC/CATALYST
Cytometry dATa anALYSis Tools
.Rbuildignore
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/.Rapp.history
R/AllGenerics.R
R/AllMethods.R
R/adaptSpillmat.R
R/applyCutoffs.R
R/assignPrelim.R
R/clrDR.R
R/cluster.R
R/compCytof.R
R/computeSpillmat.R
R/data.R
R/estCutoffs.R
R/extractClusters.R
R/filterSCE.R
R/guessPanel.R
R/mergeClusters.R
R/normCytof.R
R/pbMDS.R
R/plotAbundances.R
R/plotClusterExprs.R
R/plotCodes.R
R/plotCounts.R
R/plotDR.R
R/plotDiffHeatmap.R
R/plotEvents.R
R/plotExprHeatmap.R
R/plotExprs.R
R/plotFreqHeatmap.R
R/plotMahal.R
R/plotMultiHeatmap.R
R/plotNRS.R
R/plotPbExprs.R
R/plotScatter.R
R/plotSpillmat.R
R/plotYields.R
R/prepData.R
R/runDR.R
R/sce2fcs.R
R/utils-compensation.R
R/utils-debarcoding.R
R/utils-differential.R
R/utils-normalization.R
R/utils-preprocessing.R
R/validityChecks.R
README.md
data/PBMC_fs.rda
data/PBMC_md.rda
data/PBMC_panel.rda
data/isotope_list.rda
data/merging_table.rda
data/mp_cells.rda
data/raw_data.rda
data/sample_ff.rda
data/sample_key.rda
data/ss_exp.rda
inst/extdata/estCutoffs.png
inst/extdata/interactions.png
inst/extdata/methods.png
inst/extdata/refs.bib
inst/extdata/sticker.png
man/SCE-accessors.Rd
man/adaptSpillmat.Rd
man/applyCutoffs.Rd
man/assignPrelim.Rd
man/clrDR.Rd
man/cluster.Rd
man/compCytof.Rd
man/computeSpillmat.Rd
man/data.Rd
man/estCutoffs.Rd
man/extractClusters.Rd
man/filterSCE.Rd
man/guessPanel.Rd
man/mergeClusters.Rd
man/normCytof.Rd
man/pbMDS.Rd
man/plotAbundances.Rd
man/plotClusterExprs.Rd
man/plotCodes.Rd
man/plotCounts.Rd
man/plotDR.Rd
man/plotDiffHeatmap.Rd
man/plotEvents.Rd
man/plotExprHeatmap.Rd
man/plotExprs.Rd
man/plotFreqHeatmap.Rd
man/plotMahal.Rd
man/plotMultiHeatmap.Rd
man/plotNRS.Rd
man/plotPbExprs.Rd
man/plotScatter.Rd
man/plotSpillmat.Rd
man/plotYields.Rd
man/prepData.Rd
man/runDR.Rd
man/sce2fcs.Rd
tests/testthat.R
tests/testthat/test_accessors.R
tests/testthat/test_clustering.R
tests/testthat/test_compCytof.R
tests/testthat/test_computeSpillmat.R
tests/testthat/test_debarcoding.R
tests/testthat/test_extractClusters.R
tests/testthat/test_filterSCE.R
tests/testthat/test_normCytof.R
tests/testthat/test_plotDiffHeatmap.R
tests/testthat/test_plotExprHeatmap.R
tests/testthat/test_plotMultiHeatmap.R
tests/testthat/test_plotScatter.R
tests/testthat/test_plotting-differential.R
tests/testthat/test_plotting-preprocessing.R
tests/testthat/test_prepData.R
tests/testthat/test_runDR.R
tests/testthat/test_sce2fcs.R
tests/testthat/test_utils-compensation.R
tests/testthat/test_utils-differential.R
tests/testthat/test_utils-preprocessing.R
vignettes/differential.Rmd
vignettes/preprocessing.Rmd
