guessPanel: Guess parameter panel

In HelenaLC/CATALYST: Cytometry dATa anALYSis Tools

Guess parameter panel

Description

Helper function to parse information from the parameters slot of a flowFrame/flowSet.

Usage

guessPanel(x, sep = "_")

Arguments

x	a flowFrame.
sep	character string specifying how channel descriptions should be parsed. E.g., if pData(x)$desc contains both channel and antigens formatted as, 155Gd_CD73, descriptions will be split according to sep and everything after the first sep will be used as the antigen name (here, CD73).

Value

a data.frame with the following columns:

• name: the parameter name as extracted from the input flowFrame,

• desc: the parameter description as extracted from the input flowFrame,

• antigen: the targeted protein markers, and

• use_channel: logical. If TRUE, the channel is expected to contain a marker and will be kept.

Author(s)

Mark D Robinson & Helena L Crowell [e-mail]

Examples

# examplary data with Time, DNA, BC channels, etc.
data(raw_data)
guessPanel(raw_data[[1]])

HelenaLC/CATALYST documentation built on April 1, 2024, 3:16 a.m.