| ABItgt | ABItgt() Computes ABI for target F, e.g. ABImsy (Griffith et... |
| ALK | ALK function |
| ALKs | annual ALK function |
| alk.sample | generates annual ALK sample with length stratified sampling |
| applyALK | applyALK function to length to age |
| asem2spm | asem2spm() |
| bioidx.sim | generates FLIndexBiomass with random observation error from... |
| blag | blag() |
| ca.sim | generates catch.n with lognormal annual and multinomial age... |
| computeFbrp | computeFbrp() Computes biological reference points... |
| computeFbrps | computeFbrps() Computes biological reference points... |
| Fbrp | Fbrp() Extract Fbrp based reference points from output of... |
| Fe40 | Fe40() Patterson estimator for Fmsy |
| flr2stars | flr2stars() |
| Fmmy | Fmmy() Uses opt.bisect to derive the F at Maximum Median... |
| Fp05 | Calculates the Fbar value giving a maximum probability of ssb... |
| Fsim | Fsim() Simulates stochastic stock dynamics under under... |
| fudc | fudc() |
| fwd2stars | Function to summarise forecast results |
| getF | getF() |
| huecol | huecol |
| iALK | inverse ALK function with lmin added to FLCore::invALK |
| idx.sim | generates FLIndex with lognormal annual and multinomial age... |
| jabba2FLStockR | jabba2FLStockR() |
| jabba2stars | jabba2stars() |
| len.sim | function to generate survey (pulse) and continuous LFDs |
| lfd.sim | function to generate survey (pulse) and continuous LFDs |
| Mlorenzen | Mlorenzen |
| newselex | generates flexible 5-paramater selex curves |
| opt.bisect | Bisection approach to optimise x for maximising y |
| pgquant | sets plus group on FLQuant |
| plotAdvice | plotAdvice Plots stochastic stock dynamics against refpts for... |
| plotAR | plotAR Plots the new proposed ICES advice rule |
| plotbioage | plotbioage() Plots stock N_a, W_a, M_a and Mat_a by year |
| plotbioyr | plotbioyr() Plots stock N_a, W_a, M_a and Mat_a across years |
| plotdyn | plotdyn() Plots stock trajectories at age |
| ploteq | ploteq() Modification of method plot('FLBRP') to plot... |
| plotFsim | plotFsim Plots stochastic stock dynamics against refpts for... |
| plotMajuro | Plots the new proposed ICES advice rule |
| plotpf | plotpf() |
| plotspr | plotspr() Plots current vs unfished spawning biomass per... |
| plotWKREF | plotWKREF Plots the new proposed ICES advice rule |
| rc4 | r4sscol |
| rffwd | rffwd() Project forward an FLStock with evolutionary Fbar |
| rGclass | Function to characterize Productivity and refpts based on r... |
| schaefer.sim | schaefer.sim() |
| sops | scales catch-at-age to total catch with error (optional) |
| spict2FLQuant | spict2FLQuant() |
| spict2FLStockR | spict2FLStockR() |
| spict2stars | spict2stars() |
| ss2FLStockR | ss2FLStockR() |
| ss2stars | ss2stars() |
| ss3col | ss3col |
| ssmvln | ssmvln() |
| stock2ratios | stock2ratios() |
| stockMedians | Converts FLStock into simplified FLStock with Median FLQuants |
| updsr | updsr() |
| updstars | updstars() |
