Description Usage Arguments Fields and Methods Author(s) Examples
Package: aroma.Base
Class BaseFile
Object
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~~+--
BaseFile
Directly known subclasses:
public static class BaseFile
extends Object
1 |
sections |
A |
... |
Not used. |
Methods:
appendSection | Adds a section to this BASE file structure. | |
as.character | Gets a string description of object. | |
as.list | Gets a list representation of object. | |
equals | Checks if this object equals another. | |
getAllDataFiles | Gets the names of a external data files used by a BASE file. | |
getSection | Gets one section of this BASE file structure. | |
getSections | Gets a subset or all BASE sections. | |
hasSerialBioAssaySets | Checks if the bioassay sets have data in serial format. | |
isSerial | Checks if a BASE file is in serial format or not. | |
length | - | |
nbrOfSections | Gets the number of sections in this BASE file structure. | |
read | Static method to read a BASE file structure. | |
removeAllDataFiles | Removes all external data files used by a BASE file structure. | |
removeSection | Removes a section from a BASE file structure. | |
replaceSection | Replaces a section in a BASE file structure. | |
seq | Gets an index sequence for the sections in this BASE file structure. | |
write | Writes this BASE file structure. | |
Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save
Henrik Bengtsson (http://www.braju.com/R/)
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 | # Read a simple BASE file structure (adopted from [2])
filename <- system.file("data-ex", "baseExample.base", package="aroma.Base")
base <- BaseFile$read(filename)
print(base)
# Write it back to file
tmpfile <- tempfile()
write(base, tmpfile)
# Read the newly create file
base2 <- BaseFile$read(tmpfile)
file.remove(tmpfile)
# Compare with the original structure
stopifnot(equals(base, base2))
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