BaseFileAssays: The BaseFileAssays class extending BaseFileSection
In HenrikBengtsson/aroma.Base: A generic R plugin dispatcher for BASE

Description Usage Arguments Fields and Methods Author(s)

Package: aroma.Base
Class BaseFileAssays

Object
~~|
~~+--BaseFileSection
~~~~~~~|
~~~~~~~+--BaseFileAssays

Directly known subclasses:

public static class BaseFileAssays
extends BaseFileSection

1	BaseFileAssays(...)

...

Arguments passed to constructor of superclass.

Methods:

	`as.character`	Gets a string description of object.
	`getAnnotationColumns`	Gets the names of the annotation columns.
	`getCount`	Gets the (expected) number of assays in the data table.
	`getDataByIds`	Gets a subset of data for one or all bioassays in the bioassay set.
	`getId`	Gets the id of all bioassays in the bioassay set.
	`getName`	Gets the name of all bioassays in the bioassay set.
	`getParents`	Gets the ids of the assay parents of all bioassays in the bioassay set.
	`nbrOfAssays`	Gets the (expected) number of assays in the data table.
	`setAnnotationColumns`	Sets the names of the annotation columns.
	`setCount`	Sets (or update) the number of assays in the data table.
	`setData`	Sets data of a BASE file section.
	`setDataFieldByIds`	Sets a field of one or all bioassays in the bioassay set.
	`setName`	Sets the names of one or all bioassays in the bioassay set.
	`setParents`	Sets the ids of the assay parents of one or all bioassays in the bioassay set.
	`validate`	Validates assays section.

Methods inherited from BaseFileSection:
addColumn, as.character, as.list, equals, getColumns, getData, getDataByKeys, getHeader, getHeaders, getType, hasColumns, hasData, hasHeaders, nbrOfHeaders, print, setColumns, setData, setDataFieldByKeys, setHeader, setType, sizeOfData, validate

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

Henrik Bengtsson (http://www.braju.com/R/)

HenrikBengtsson/aroma.Base documentation built on May 7, 2019, 1:51 a.m.