BaseFileSpots: The BaseFileSpots class extending BaseFileSection

In HenrikBengtsson/aroma.Base: A generic R plugin dispatcher for BASE

Description

Package: aroma.Base
Class BaseFileSpots

Object
~~|
~~+--BaseFileSection
~~~~~~~|
~~~~~~~+--BaseFileSpots

Directly known subclasses:

public static class BaseFileSpots
extends BaseFileSection

Usage

BaseFileSpots(...)

Arguments

...	Arguments passed to constructor of superclass.

Fields and Methods

Methods:

	as.character	Gets a string description of object.
	getAssayFields	Gets the names of the assay-field data columns.
	getAssays	Gets the ids of the assays in this section.
	getColumns	Gets the names of the non-assay-field data columns.
	getData	Gets a subset of or the complete data table.
	getDataFiles	Gets the filenames where data of an assay-field section is stored.
	hasDataFiles	Checks if data of an assay-field section is stored on file.
	nbrOfAssays	Gets the number of assays in this section.
	setAssays	Sets the ids of the assays in this section.
	setColumns	Sets the column names of the data table.
	setDataFields	Sets data field for an assay in a BASE file spots section.
	setDataFiles	Sets the filenames where data of an assay-field section is stored.

Methods inherited from BaseFileSection:
addColumn, as.character, as.list, equals, getColumns, getData, getDataByKeys, getHeader, getHeaders, getType, hasColumns, hasData, hasHeaders, nbrOfHeaders, print, setColumns, setData, setDataFieldByKeys, setHeader, setType, sizeOfData, validate

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

Author(s)

Henrik Bengtsson (http://www.braju.com/R/)

HenrikBengtsson/aroma.Base documentation built on May 7, 2019, 1:51 a.m.