inst/testScripts/system/chipTypes/HG-U133_Plus_2/01c.installPackages.R

In HenrikBengtsson/aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

path <- system.file("testScripts/R", package="aroma.affymetrix")
pathname <- file.path(path, "installUtils.R")
source(pathname)

library("R.utils")

# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# Install
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
verbose && enter(verbose, "Installing test-specific packages")

pkgs <- c("BioC:limma", "BioC:affy", "BioC:gcrma", "BioC:oligo")
pkgs <- c(pkgs, "BioC:hgu133plus2cdf")
pkgs <- c(pkgs, "BioC:hgu133plus2.db")
pkgs <- c(pkgs, "BioC:pd.hg.u133.plus.2")

for (pkg in pkgs) {
  verbose && cat(verbose, "Package: ", pkg)
  installPkg(pkg)
}

verbose && exit(verbose)