Run revdep_details(,"apmsWAPP")
for more info
...
TSPM: no visible global function definition for ‘p.adjust’
norm.inttable: no visible global function definition for ‘median’
norm.inttable : <anonymous>: no visible global function definition for
‘quantile’
saint_permF: no visible global function definition for ‘read.table’
saint_permF: no visible global function definition for ‘write.table’
saint_permF: no visible global function definition for ‘write.csv2’
tspm_apms: no visible global function definition for ‘read.table’
varFilter : <anonymous>: no visible global function definition for
‘median’
varFilter: no visible global function definition for ‘median’
varFilter: no visible global function definition for ‘quantile’
Undefined global functions or variables:
deviance glm hatvalues median p.adjust pchisq pf poisson qchisq qf
quantile read.table residuals write.csv2 write.table
Consider adding
importFrom("stats", "deviance", "glm", "hatvalues", "median",
"p.adjust", "pchisq", "pf", "poisson", "qchisq", "qf",
"quantile", "residuals")
importFrom("utils", "read.table", "write.csv2", "write.table")
to your NAMESPACE file.
Run revdep_details(,"aroma.affymetrix")
for more info
checking installed package size ... NOTE
installed size is 5.8Mb
sub-directories of 1Mb or more:
R 2.3Mb
help 1.1Mb
testScripts 1.3Mb
checking dependencies in R code ... NOTE
Error in setGeneric("getX", function(object, type) standardGeneric("getX")) :
could not find function "setGeneric"
Run revdep_details(,"aroma.core")
for more info
Packages suggested but not available for checking:
'sfit', 'expectile', 'HaarSeg', 'mpcbs'
Run revdep_details(,"EDASeq")
for more info
checking whether the namespace can be loaded with stated dependencies ... WARNING ``` Error in setGeneric("Makesense", function(expr, lib, ...) standardGeneric("Makesense")) : could not find function "setGeneric" Error: unable to load R code in package ‘geneplotter’ Execution halted
A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start.
Probably some imports need to be declared in the NAMESPACE file. ```
checking examples ... WARNING ``` Found the following significant warnings:
Warning: 'GenomicRangesList' is deprecated. Deprecated functions may be defunct as soon as of the next release of R. See ?Deprecated. ```
checking R code for possible problems ... NOTE
Error in setGeneric("Makesense", function(expr, lib, ...) standardGeneric("Makesense")) :
could not find function "setGeneric"
Error: unable to load R code in package ‘geneplotter’
Execution halted
Run revdep_details(,"scone")
for more info
checking whether the namespace can be loaded with stated dependencies ... WARNING ``` Error in setGeneric("Makesense", function(expr, lib, ...) standardGeneric("Makesense")) : could not find function "setGeneric" Error: unable to load R code in package ‘geneplotter’ Execution halted
A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start.
Probably some imports need to be declared in the NAMESPACE file. ```
checking R code for possible problems ... NOTE
Error in setGeneric("Makesense", function(expr, lib, ...) standardGeneric("Makesense")) :
could not find function "setGeneric"
Error: unable to load R code in package ‘geneplotter’
Execution halted
Run revdep_details(,"scran")
for more info
checking tests ... ``` ERROR Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: ══ testthat results ═══════════════════════════════════════════════════════════ [ OK: 5478 | SKIPPED: 0 | WARNINGS: 843 | FAILED: 9 ]
Error: testthat unit tests failed Execution halted Error while shutting down parallel: unable to terminate some child processes ```
checking examples ... WARNING
...
Warning: 'normalizeSCE' is deprecated.
Warning: 'centreSizeFactors' is deprecated.
Warning: handling of spike-ins via 'isSpike()' is deprecated.
Warning: 'overlapExprs' is deprecated.
Warning: 'parallelPCA' is deprecated.
Warning: 'technicalCV2' is deprecated.
Warning: 'isSpike<-' is deprecated.
Warning: 'spikeNames' is deprecated.
Warning: 'isSpike' is deprecated.
Warning: 'technicalCV2' is deprecated.
Warning: 'testVar' is deprecated.
Warning: 'testVar' is deprecated.
Warning: 'testVar' is deprecated.
Warning: handling of spike-ins via 'isSpike()' is deprecated.
Warning: 'normalizeSCE' is deprecated.
Warning: 'centreSizeFactors' is deprecated.
Warning: 'trendVar' is deprecated.
Warning: 'trendVar' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
checking installed package size ... NOTE
installed size is 25.2Mb
sub-directories of 1Mb or more:
doc 2.1Mb
libs 22.0Mb
Run revdep_details(,"TIN")
for more info
...
scatterPlot: no visible global function definition for ‘pdf’
scatterPlot: no visible global function definition for ‘bmp’
scatterPlot: no visible global function definition for ‘plot’
scatterPlot: no visible global function definition for ‘ave’
scatterPlot: no visible global function definition for ‘axis’
scatterPlot: no visible global function definition for ‘text’
scatterPlot: no visible global function definition for ‘mtext’
scatterPlot: no visible global function definition for ‘points’
scatterPlot: no visible global function definition for ‘dev.off’
Undefined global functions or variables:
ave axis bmp colorRampPalette data dev.off dist hclust hist jpeg
median mtext par pdf plot png points postscript quantile read.table
text
Consider adding
importFrom("grDevices", "bmp", "colorRampPalette", "dev.off", "jpeg",
"pdf", "png", "postscript")
importFrom("graphics", "axis", "hist", "mtext", "par", "plot",
"points", "text")
importFrom("stats", "ave", "dist", "hclust", "median", "quantile")
importFrom("utils", "data", "read.table")
to your NAMESPACE file.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.