microbiomeMarker-class: The main class for microbiomeMarker data

In HuaZou/MicrobiomeAnalysis: Data analysis toolkits in metagenomics

The main class for microbiomeMarker data

Description

microbiomeMarker-class is inherited from the phyloseq::phyloseq by adding a custom slot microbiome_marker to save the differential analysis results. And it provides a seamless interface with phyloseq, which makes microbiomeMarker simple and easy to use. For more details on see the document of phyloseq::phyloseq.

Usage

## S4 method for signature 'microbiomeMarker'
show(object)

Arguments

object

a microbiomeMarker-class object

Value

a microbiomeMarker object.

Slots

marker_table

a data.frame, a marker_table object.

norm_method

character, method used to normalize the input phyloseq object.

diff_method

character, method used for marker identification.

See Also

phyloseq::phyloseq, marker_table, summarize_taxa()

HuaZou/MicrobiomeAnalysis documentation built on May 13, 2024, 11:10 a.m.