postHocTest-class: The postHocTest Class, represents the result of post-hoc test...

In HuaZou/MicrobiomeAnalysis: Data analysis toolkits in metagenomics

The postHocTest Class, represents the result of post-hoc test result among multiple groups

Description

The postHocTest Class, represents the result of post-hoc test result among multiple groups

Usage

## S4 method for signature 'postHocTest'
show(object)

Arguments

object

a postHocTest-class object

Value

a postHocTest object.

Slots

result

a IRanges::DataFrameList, each DataFrame consists of five variables:

• comparisons: character, specify which two groups to test (the group names are separated by "_)

• diff_mean: numeric, difference in mean abundances

• pvalue: numeric, p values

• ci_lower and ci_upper: numeric, lower and upper confidence interval of difference in mean abundances

abundance

abundance of each feature in each group

conf_level

confidence level

method

method used for post-hoc test

method_str

method illustration

Author(s)

Yang Cao

HuaZou/MicrobiomeAnalysis documentation built on May 13, 2024, 11:10 a.m.