phyloseq2edgeR: Convert phyloseq data to edgeR 'DGEList' object
In HuaZou/MicrobiomeAnalysis: Data analysis toolkits in metagenomics
phyloseq2edgeR R Documentation
Convert phyloseq data to edgeR DGEList object
Description
This function convert phyloseq::phyloseq object to
edgeR::DGEList object, can then can be used to perform
differential analysis using the methods in edgeR.
Usage
phyloseq2edgeR(ps, ...)
Arguments
ps
a phyloseq::phyloseq object.
...
optional, additional named arguments passed to
edgeR::DGEList(). Most users will not need to pass any additional
arguments here.
Value
A edgeR::DGEList object.
Examples
data(caporaso)
dge <- phyloseq2edgeR(caporaso)
HuaZou/MicrobiomeAnalysis documentation built on May 13, 2024, 11:10 a.m.
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| phyloseq2edgeR | R Documentation |
Convert phyloseq data to edgeR DGEList object
Description
This function convert phyloseq::phyloseq object to
edgeR::DGEList object, can then can be used to perform
differential analysis using the methods in edgeR.
Usage
phyloseq2edgeR(ps, ...)
Arguments
ps |
a |
... |
optional, additional named arguments passed to
|
Value
A edgeR::DGEList object.
Examples
data(caporaso)
dge <- phyloseq2edgeR(caporaso)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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