epiRomics_enhancer_predictor_test: Interrogates various histone marks against a curated database...

In Huising-Lab/epiRomics: Epigenomic Analysis Package Built for R (epiRomics)

Interrogates various histone marks against a curated database to determine which are most informative

Description

Interrogates various histone marks against a curated database to determine which are most informative

Usage

epiRomics_enhancer_predictor_test(
  epiRomics_dB,
  epiRomics_histone = "h3k4me1",
  epiRomics_curated_database = "fantom"
)

Arguments

epiRomics_dB	epiRomics class database containing all data initially loaded
epiRomics_histone	name or vector of histone mark(s), must match name in epiROmics_dB@meta, default set to h3k4me1
epiRomics_curated_database	database to test histone marks against, must match name in epiROmics_dB@meta default set to fantom

Value

Variable of class dataframe further exploring top histone marks that may determine enhancer regions

Huising-Lab/epiRomics documentation built on Nov. 21, 2023, 5:55 a.m.