doCluster: do Unsupervised Clustering using kNN-graph

In HuobinTan/scVAT: Single Cell Visualization Analysis Toolkit

Description

do Unsupervised Clustering using kNN-graph

Usage

doCluster(vat, analysis.key = "PCA", pc.num = 50,
  cluster.name = "cluster", k = 100, dist.type = "euclidean",
  save.KNN = TRUE, verbose = TRUE, ...)

Arguments

vat	vat entity
analysis.key	analysis.key for clustering
pc.num	PC components for clustering
cluster.name	cell.props's column name saving cluster results
k	k-nearest graph's value, default 100, if 0, then set k = floor(sqrt(nrow(cells))/2)
dist.type	default "euclidean"
save.KNN	whether or not saving kN, default TRUE (no implemented)
verbose	whether or not printing verbose, default TRUE

Examples

vat <- doCluster(vat)

HuobinTan/scVAT documentation built on May 31, 2019, 2:20 p.m.