plotTSNE: plot tsne maps

In HuobinTan/scVAT: Single Cell Visualization Analysis Toolkit

Description

plot tsne maps

Usage

plotTSNE(vat, title = NULL, group.id = NULL, gradient = FALSE,
  colors = NULL, source = "tsne", ...)

Arguments

vat	VAT Entity
title	plot's title
group.id	cell property for group
gradient	whether or not with gradient
colors	color palette
source	plot's data source for shinyui
...	other parameters for plot_ly

Value

plot.ly object

Examples

plotTSNE(vat, title="Example", group.id="cluster", gradient=FALSE)

HuobinTan/scVAT documentation built on May 31, 2019, 2:20 p.m.