doTSNE: do tSNE using Rtsne library

In HuobinTan/scVAT: Single Cell Visualization Analysis Toolkit

Description

do tSNE using Rtsne library

Usage

doTSNE(vat, dims = 2, analysis.key = "PCA", use.col = 50,
  key = "tSNE", seed = NULL, ...)

Arguments

vat	vat entity
dims	tSNE dimension
analysis.key	tSNE input data key, default "PCA", if NULL, use vat@data
use.col	columns number for tSNE
key	set tSNE result's key, default "tSNE"
seed	random seed for tSNE, default NULL
...	see also Rtsne::Rtsne parameters, For example, set check_duplicates = FALSE for Error "Remove duplicates before running TSNE."

Examples

vat <- doTSNE(vat, dims = 2, use.col = 50, seed = 100)

HuobinTan/scVAT documentation built on May 31, 2019, 2:20 p.m.