filterCells: Filter cells

Description Usage Arguments Value Examples

Description

Filter cells

Usage

1
filterCells(vat, prop.name, lower.limit, upper.limit)

Arguments

vat

VAT Entity

prop.name

filtered cell's prop.name

lower.limit

filtered lower limit, only keeping the cells which properties are more than lower.limit

upper.limit

filtered upper limit, only keeping the cells which properties are less than upper.limit

Value

filtered data

Examples

1
2
 #filtering vat where 0< gene.nums < Inf and 0 < umi < 10000
 vat <- filterCells(vat, prop.name = c("gene.nums","umi"),lower.limit = c(0, 0), upper.limit = c(Inf, 10000))

HuobinTan/scVAT documentation built on May 31, 2019, 2:20 p.m.