vcfR2removepoorcovloci_dp: vcfR2removepoorcovloci_dp
In IDEELResearch/vcfR2manip: Basic functions for manipulating VCFs within the VCFR object/R environment
Description
Read vcfR object to remove loci where too few samples have coverage
Usage
1
vcfR2removepoorcovloci_dp(vcfRobject = NULL, minsampleswithcoverage = 1)
Arguments
vcfRobject
vcfR; a vcfR object
minsampleswithcoverage
numeric; the minimum number of samples with coverage \(i.e. DP > 0) needed for a loci to be kept
IDEELResearch/vcfR2manip documentation built on Nov. 16, 2020, 3:51 a.m.
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Description
Read vcfR object to remove loci where too few samples have coverage
Usage
1 | vcfR2removepoorcovloci_dp(vcfRobject = NULL, minsampleswithcoverage = 1)
|
Arguments
vcfRobject |
vcfR; a vcfR object |
minsampleswithcoverage |
numeric; the minimum number of samples with coverage \(i.e. DP > 0) needed for a loci to be kept |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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