vcffilter_ChromPos: vcffilter_ChromPos
In IDEELResearch/vcfR2manip: Basic functions for manipulating VCFs within the VCFR object/R environment
Description
Usage
Arguments
Details
Description
Produces a subsetted vcfR with specific loci excluded as determined chromposdf.
Usage
1
vcffilter_ChromPos(vcfRobject = NULL, chromposbed = NULL)
Arguments
chromposdf
an dataframe that contains loci to be excluded and is in the form of a bedfile or has
been produced by GFF2VariantAnnotation_Short
Details
chromposdf must be a tibble with columns: seqname (where chromomsome information is stored), start, end, geneid. The logic
behding the "seqname" is allow users to carry around chromosome names that may be different in the bed file and the vcf
IDEELResearch/vcfR2manip documentation built on Nov. 16, 2020, 3:51 a.m.
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Description Usage Arguments Details
Description
Produces a subsetted vcfR with specific loci excluded as determined chromposdf.
Usage
1 | vcffilter_ChromPos(vcfRobject = NULL, chromposbed = NULL)
|
Arguments
chromposdf |
an dataframe that contains loci to be excluded and is in the form of a bedfile or has
been produced by |
Details
chromposdf must be a tibble with columns: seqname (where chromomsome information is stored), start, end, geneid. The logic behding the "seqname" is allow users to carry around chromosome names that may be different in the bed file and the vcf
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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